Background: Obesity and hypertension are the most important non-communicable diseases that in many studies, the prevalence and their risk factors have been performed in each geographic region univariately. Study of factors affecting both obesity and hypertension may have an important role which to be addressed in this study.Materials & Methods: This cross-sectional study was conducted on 1000 men aged 20-70 living in Bushehr province. Blood pressure was measured three times and the average of them was considered as one of the response variables. Hypertension was defined as systolic blood pressure³140 (and-or) diastolic blood pressure³90 and obesity was defined as body mass index ³25. Data was analyzed by using multilevel, Multivariate logistic regression model by MlwiN software.Results: Intra class correlations in cluster level obtained 33% for high blood pressure and 37% for obesity, so two level model was fitted to data. The prevalence of obesity and hypertension obtained 43.6% (0.95%CI; 40.6-46.5), 29.4% (0.95%CI; 26.6-32.1) respectively. Age, gender, smoking, hyperlipidemia, diabetes, fruit and vegetable consumption and physical activity were the factors affecting blood pressure (p£0.05). Age, gender, hyperlipidemia, diabetes, fruit and vegetable consumption, physical activity and place of residence are effective on obesity (p£0.05).Conclusion: The multilevel models with considering levels distribution provide more precise estimates.As regards obesity and hypertension are the major risk factors for cardiovascular disease, by knowing the high-risk groups we can d careful planning to prevention of non-communicable diseases and promotion of society health.